Book
Refereed Journal Articles
- Gang Fang, Gaurav Pandey, Wen Wang, Manish Gupta, Michael Steinbach
and Vipin Kumar,
Mining Low-support Discriminative Patterns from Dense and
High-dimensional Data, to appear in IEEE Transaction on Knowledge
and Data Engineering (TKDE), 2010 (preprint)
- Gaurav Pandey, Chad L. Myers and Vipin Kumar,
Incorporating Functional Inter-relationships into Protein Function Prediction Algorithms,
BMC Bioinformatics, 10:142, 2009 (Highly Accessed).
- Brian Van Ness, Christine Ramos, Majda Haznadar, Antje Hoering, Jeff
Haessler, John Crowley, Susanna Jacobus, Martin
Oken, Vincent Rajkumar, Philip Greipp, Bart Barlogie, Brian Durie,
Michael Katz, Gowtham Atluri, Gang Fang, Rohit Gupta, Michael
Steinbach, Vipin Kumar, Richard
Mushlin, David Johnson and Gareth Morgan,
Genomic
Variation in Myeloma: Design, content and initial application of the Bank On A Cure
SNP Panel to detect associations with progression free survival,
BMC Medicine,
Volume 6, pp 26, 2008.
- TaeHyun Hwang, Hugues Sicotte, Ze Tian, Baolin Wu, Dennis
Wigle, Jean-Pierre Kocher, Vipin Kumar and Rui Kuang, Robust
and Efficient Identification of Biomarkers by Classifying Features on
Graphs, Bioinformatics,
Volume 24, no. 18, pages 2023-2029, 2008
Refereed Conference and Workshop Articles
- Gaurav Pandey, Gowtham Atluri, Michael Steinbach, Chad L. Myers and Vipin Kumar,
An Association Analysis Approach
to Biclustering,
Proceedings of the ACM International Conference on Knowledge Discovery and
Data Mining (SIGKDD), in press, 2009.
- Rohit Gupta, Michael Steinbach, Karla Ballman, Vipin Kumar, Petrus C. de Groen, "Colorectal Cancer Despite Colonoscopy: Critical Is the Endoscopist, Not the Withdrawal Time", [Abstract] Gastroenterology, Volume 136, Issue 5, Supplement 1, May 2009, Pages A-55. (Selected for presentation in clinical science plenary session in DDW 2009) [Recipient of Student Abstract Prize]
- Rohit Gupta, Michael Steinbach, Karla Ballman, Vipin Kumar, Petrus C. de Groen, "Colorectal Cancer Despite Colonoscopy: Estimated Size of the Truly Missed Lesions". [Abstract] Gastroenterology, Volume 136, Issue 5, Supplement 1, May 2009, Pages A-764. (Presented in DDW 2009)
- Rohit Gupta,
Brian N. Brownlow, Robert A. Domnick, Gavin Harewood, Michael
Steinbach, Vipin Kumar, Piet C. de Groen, Colon
Cancer Not Prevented By Colonoscopy, American College of
Gastroenterology (ACG) Annual Meeting, 2008 (Recipient of the 2008 ACG Olympus Award
and the 2008 ACG Presidential Award)
- Gaurav Pandey, Lakshmi Naarayanan Ramakrishnan, Michael Steinbach and Vipin Kumar,
Systematic
Evaluation of Scaling Methods for Gene Expression Data,
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp 376-381, 2008.
- Gaurav Pandey, Gowtham Atluri, Michael Steinbach and Vipin
Kumar, Association
Analysis Techniques for Discovering Functional Modules from Microarray
Data , Proceedings of the ISMB satellite meeting on Automated Function Prediction 2008
(Also published as
Nature Precedings 10.1038/npre.2008.2184.1)
- Gaurav Pandey, Michael Steinbach, Rohit Gupta, Tushar Garg and Vipin
Kumar, Association
Analysis-based Transformations for Protein Interaction Networks: A
Function Prediction Case Study,
Proceedings of the ACM International Conference on Knowledge Discovery and
Data Mining (SIGKDD), pp 540-549, 2007 (Also selected for a Highlight
talk at ISMB 2008).
- Gaurav Pandey and Vipin
Kumar, Incorporating
Functional Inter-relationships into Algorithms for Protein Function
Prediction, Proceedings of the ISMB satellite meeting on Automated Function Prediction 2007
- Rohit Gupta, Tushar Garg, Gaurav Pandey, Michael Steinbach and Vipin
Kumar, Comparative
Study of Various Genomic Data Sets for Protein Function Prediction and
Enhancements Using Association Analysis,
Proceedings of the Workshop on Data
Mining for Biomedical Informatics, held in conjunction with SIAM
International Conference on Data Mining, 2007
- Hui Xiong, X. He, Chris Ding, Ya Zhang, Vipin Kumar and Stephen R.
Holbrook, Identification of Functional Modules
in Protein Complexes via Hyperclique Pattern Discovery, pp 221-232, Proc. of the Pacific Symposium on Biocomputing, 2005
- Benjamin Mayer, Huzefa Rangwala, Rohit Gupta, Jaideep Srivastava,
George Karypis, Vipin Kumar and Piet de Groen,
Feature Mining for Prediction of Degree of Liver Fibrosis,
Proc. Annual Symposium
of American Medical Informatics Association (AMIA), 2005
Technical Reports
- Gowtham Atluri, Gaurav Pandey, Jeremy Bellay, Chad Myers and Vipin Kumar,
Two-Dimensional Association Analysis For Finding Constant Value Biclusters In Real-Valued Data,
Technical Report 09-020, July 2009, Department of Computer
Science, University of Minnesota
- Gaurav Pandey, Gowtham Atluri, Michael Steinbach and Vipin Kumar,
Association
Analysis for Real-valued Data: Definitions and Application to
Microarray Data,
Technical Report 08-007, March 2008, Department of Computer
Science, University of Minnesota
- Gaurav Pandey, Lakshmi Naarayanan Ramakrishnan, Michael Steinbach,
Vipin Kumar, Systematic
Evaluation of Scaling Methods for Gene Expression Data,
Technical Report 07-015, August 2007, Department of Computer
Science, University of Minnesota
- Gaurav Pandey, Vipin Kumar and Michael Steinbach, Computational
Approaches for Protein Function Prediction: A Survey,
Technical Report 06-028, October 2006, Department of Computer Science, University of Minnesota